I just installed a new Multiplus 2000va in my motor home. The second charge output is connected to The CBE control unit and is basically a 12v signal indicating if 230V is connected or not. On my previous Mastervolt installation this output was only on if I had shore power connected. On my Victron it is currently always on, leading my main panel to believe that I always have 230v. This leads to a warning signal every time I turn on the ignition.
Can I control this output through the USB interface and the configuration software?
No you can not, as described it is permanently on and follows the main DC voltage. As noted above, feed it through a programmable relay via relay assistant to make it switchable.
Output from trickle charger goes to COM, I would connect the signal wire to your system to NO and program the relay assistant to close the relay when ac in is present. I believe you need a second assistant to open the relay when ac in is not present.